The CD44 alternative v9 exon contains a splicing enhancer responsive to the SR proteins 9G8, ASF/SF2, and SRp20

J Biol Chem. 2003 Aug 29;278(35):32943-53. doi: 10.1074/jbc.M301090200. Epub 2003 Jun 24.

Abstract

The CD44 gene alternative exons v8, v9, and v10 are frequently spliced as a block by epithelial cells. By transfecting minigenes containing only one of these alternative exons, we show that splicing of each of them is under cell type-specific control. By using minigenes carrying short block mutations within exons v8 and v9, we detected a candidate exon splicing enhancer in each of these exons. These candidates activated splicing in vitro of a heterologous transcript and are thus true exon splicing enhancers. We analyzed further a v9 exon splicing enhancer covering approximately 30 nucleotides. This enhancer can be UV cross-linked to SR proteins of 35 and 20 kDa in HeLa nuclear extract. By using individual recombinant SR proteins for UV cross-linking in S100 extract, these proteins were identified as 9G8, ASF/SF2, and SRp20. S100 complementation studies using recombinant 9G8, ASF/SF2, and SRp20 showed that all three proteins can activate splicing in vitro of a heterologous exon containing the v9 enhancer; the strongest activation was obtained with 9G8. Progressive truncation of the 30-nucleotide enhancer leads to a progressive decrease in splicing activation. We propose that 9G8, ASF/SF2, SRp20, and possibly other non-SR proteins cooperate in vivo to activate v9 exon splicing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing
  • Base Sequence
  • Cell Nucleus / metabolism
  • Enhancer Elements, Genetic
  • Epithelial Cells / metabolism
  • Exons
  • Genetic Complementation Test
  • HeLa Cells
  • Humans
  • Hyaluronan Receptors / biosynthesis
  • Hyaluronan Receptors / chemistry*
  • Hyaluronan Receptors / genetics*
  • Introns
  • Models, Genetic
  • Molecular Sequence Data
  • Mutation
  • Nuclear Proteins / metabolism*
  • Nucleocytoplasmic Transport Proteins / metabolism*
  • Plasmids / metabolism
  • Protein Binding
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / metabolism*
  • Recombinant Proteins / metabolism
  • Reverse Transcriptase Polymerase Chain Reaction
  • Serine-Arginine Splicing Factors
  • Transfection
  • Ultraviolet Rays

Substances

  • Hyaluronan Receptors
  • Nuclear Proteins
  • Nucleocytoplasmic Transport Proteins
  • RNA, Messenger
  • RNA-Binding Proteins
  • Recombinant Proteins
  • SRSF3 protein, human
  • Serine-Arginine Splicing Factors