Exploring potential energy surfaces for chemical reactions: an overview of some practical methods

J Comput Chem. 2003 Sep;24(12):1514-27. doi: 10.1002/jcc.10231.

Abstract

Potential energy surfaces form a central concept in the application of electronic structure methods to the study of molecular structures, properties, and reactivities. Recent advances in tools for exploring potential energy surfaces are surveyed. Methods for geometry optimization of equilibrium structures, searching for transition states, following reaction paths and ab initio molecular dynamics are discussed. For geometry optimization, topics include methods for large molecules, QM/MM calculations, and simultaneous optimization of the wave function and the geometry. Path optimization methods and dynamics based techniques for transition state searching and reaction path following are outlined. Developments in the calculation of ab initio classical trajectories in the Born-Oppenheimer and Car-Parrinello approaches are described.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Mathematical Computing*
  • Models, Theoretical*
  • Protein Conformation
  • Rhodopsins, Microbial / chemistry
  • Thermodynamics

Substances

  • Rhodopsins, Microbial