Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) is a substrate for the nucleotide hydrolysis and RNA unwinding activities of eukaryotic translation initiation factor eIF4A

RNA. 2003 Oct;9(10):1180-7. doi: 10.1261/rna.2103703.

Abstract

Whereas ATPgammaS is often considered a nonhydrolyzable substrate for ATPases, we present evidence that ATPgammaS is a good substrate for the RNA-stimulated nucleotide hydrolysis and RNA unwinding activities of eIF4A. In the presence of saturating single-stranded poly(U) RNA, eIF4A hydrolyzes ATPgammaS.Mg and ATP.Mg with similar steady-state parameters (KM(NTP.Mg) = 66 and 58 microM and kcat = 1.0 and 0.97 min(-1), respectively). ATPgammaS.Mg also supports catalysis of RNA unwinding within 10-fold of the rate supported by ATP.Mg. The identical steady-state rate parameters, in comparison with the expected difference in the intrinsic rate of hydrolysis for ATP and ATPgammaS, suggest a nonchemical rate-limiting step for nucleotide hydrolysis. These results raise caution concerning the assumption that ATPgammaS is a nonhydrolyzable ATP analog and underscore the utility of thio-substituted NTPs as mechanistic probes.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Diphosphate
  • Adenosine Triphosphatases / metabolism
  • Adenosine Triphosphate / analogs & derivatives*
  • Adenosine Triphosphate / metabolism*
  • Animals
  • Catalysis
  • Escherichia coli / metabolism
  • Eukaryotic Initiation Factor-4A / metabolism*
  • Hydrolysis
  • Kinetics
  • Magnesium
  • Mice
  • Protein Binding
  • RNA / metabolism*
  • Substrate Specificity

Substances

  • adenosine 5'-O-(3-thiotriphosphate)
  • Adenosine Diphosphate
  • RNA
  • Adenosine Triphosphate
  • Eukaryotic Initiation Factor-4A
  • Adenosine Triphosphatases
  • Magnesium