Tn10 insertion specificity is strongly dependent upon sequences immediately adjacent to the target-site consensus sequence

Proc Natl Acad Sci U S A. 1992 Sep 1;89(17):7996-8000. doi: 10.1073/pnas.89.17.7996.

Abstract

Transposon Tn10 inserts preferentially into particular "hotspots" that have been shown by sequence analysis to contain the symmetrical consensus sequence 5'-GCTNAGC-3'. This consensus is necessary but not sufficient to determine insertion specificity. We have mutagenized a known hotspot to identify other determinants for insertion into this site. This genetic dissection of the sequence context of a protein binding site shows that a second major determinant for Tn10 insertion specificity is contributed by the 6-9 base pairs that flank each end of the consensus sequence. Variations in these context base pairs can confer variations of at least 1000-fold in insertion frequency. There is no discernible consensus sequence for the context determinant, suggesting that sequence-specific protein-DNA contacts are not playing a major role. Taken together with previous work, the observations presented suggest a model for the interaction of transposase with the insertion site: symmetrically disposed subunits bind with specific contacts to the major groove of consensus-sequence base pairs, while flanking sequences influence the interaction through effects on DNA helix structure. We also show that the determinants important for insertion into a site are not important for transposition out of that site.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Chromosome Deletion
  • DNA Mutational Analysis
  • DNA Transposable Elements*
  • DNA, Bacterial / genetics
  • DNA, Fungal / genetics
  • Histidine / genetics
  • Molecular Sequence Data
  • Nucleotidyltransferases / metabolism*
  • Recombination, Genetic*
  • Structure-Activity Relationship
  • Transposases

Substances

  • DNA Transposable Elements
  • DNA, Bacterial
  • DNA, Fungal
  • Histidine
  • Nucleotidyltransferases
  • Transposases