Sequence analysis of the membrane protein gene of human coronavirus OC43 and evidence for O-glycosylation

J Gen Virol. 1992 Oct:73 ( Pt 10):2731-6. doi: 10.1099/0022-1317-73-10-2731.

Abstract

The gene encoding the membrane (M) protein of the OC43 strain of human coronavirus (HCV-OC43) was amplified by a reverse transcription-polymerase chain reaction of viral RNA with HCV-OC43- and bovine coronavirus (BCV)-specific primers. The nucleotide sequence of the cloned 1.5 kb fragment revealed an open reading frame (ORF) of 690 nucleotides which was identified as the M protein gene from its homology to BCV. This ORF encodes a protein of 230 amino acids with an M(r) of 26416. The gene is preceded by the motif UCCAAAC, analogous to the consensus coronavirus transcription initiation sequence. The M protein of HCV-OC43 shows features typical of all coronavirus M proteins studied: a hydrophilic, presumably external N terminus including about 10% of the protein, and a potential N-glycosylation site followed by three major hydrophobic transmembrane domains. The amino acid sequence of the M protein of HCV-OC43 has 94% identity with that of the Mebus strain of BCV, and also contains six potential O-glycosylation sites in the exposed N-terminal domain. Indeed, the glycosylation of the M protein was not inhibited in the presence of tunicamycin, which is indicative of O-glycosylation, as previously reported for BCV and murine hepatitis virus. Virions released from tunicamycin-treated cells contained the M glycoprotein but were devoid of both peplomer (S) and haemagglutinin-esterase (HE) proteins. Thus, inhibition of the N-glycosylation of the S and HE structural proteins prevented their incorporation into progeny virions, an indication that they are dispensable for virion morphogenesis, unlike the M protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cells, Cultured
  • Cloning, Molecular
  • Coronaviridae / genetics*
  • Coronaviridae / growth & development
  • Coronaviridae / metabolism
  • Coronavirus M Proteins
  • Genes, Viral / genetics*
  • Glycosylation
  • Humans
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Polymerase Chain Reaction
  • Protein Processing, Post-Translational / drug effects
  • RNA, Viral / genetics*
  • Sequence Analysis
  • Sequence Homology, Amino Acid
  • Tunicamycin / pharmacology
  • Viral Matrix Proteins / genetics*
  • Viral Matrix Proteins / metabolism
  • Viral Structural Proteins / genetics*
  • Virion / growth & development

Substances

  • Coronavirus M Proteins
  • M protein, Human coronavirus OC43
  • M protein, Murine hepatitis virus
  • RNA, Viral
  • Viral Matrix Proteins
  • Viral Structural Proteins
  • Tunicamycin

Associated data

  • GENBANK/D10688
  • GENBANK/D90263
  • GENBANK/D90264
  • GENBANK/L07668
  • GENBANK/L07669
  • GENBANK/L07670
  • GENBANK/L07671
  • GENBANK/L07672
  • GENBANK/L07673
  • GENBANK/M93390