Effect of formaldehyde on the efficiency of hybridization of DNA immobilized on nitrocellulose filters

Anal Biochem. 1992 Nov 1;206(2):414-8. doi: 10.1016/0003-2697(92)90387-m.

Abstract

We report in this study that under certain conditions formaldehyde interacts with DNA and makes it more efficient for hybridization on nitrocellulose filters. Hybridization signals of formaldehyde-treated DNA are stronger (up to 10 fold) as compared with that of the heat- or alkali-denatured DNA. Various parameters of the DNA-formaldehyde reaction are optimized as follows: (a) 6 x SSC, 10% formaldehyde, 60 degrees C, 20-30 min, reaction volume 10-200 microliters or (b) 6 x SSC, 5% formaldehyde, 98 degrees C, 15 min, reaction volume 10-200 microliters. Treatment of agarose gels after electrophoresis with formaldehyde improved both the transfer of DNA and the efficiency of hybridization. The following conditions are recommended for gel treatment: denaturation in 0.3 N NaOH, 1 M NaCl followed by neutralization with 0.5 M phosphate buffer, pH 7.0, containing 10% formaldehyde at 60 degrees C for 20 min.

MeSH terms

  • Collodion
  • DNA / analysis*
  • DNA / genetics
  • Electrophoresis, Agar Gel / methods
  • Formaldehyde*
  • Indicators and Reagents
  • Nucleic Acid Denaturation
  • Nucleic Acid Hybridization / methods*
  • Phosphorus Radioisotopes
  • Plasmids*

Substances

  • Indicators and Reagents
  • Phosphorus Radioisotopes
  • Formaldehyde
  • Collodion
  • DNA