Catalysis, stereochemistry, and inhibition of ureidoglycolate lyase

J Biol Chem. 2003 Dec 12;278(50):50091-100. doi: 10.1074/jbc.M303828200. Epub 2003 Sep 23.


Ureidoglycolate lyase (UGL, EC catalyzes the breakdown of ureidoglycolate to glyoxylate and urea, which is the final step in the catabolic pathway leading from purines to urea. Although the sequence of enzymatic steps was worked out nearly 40 years ago, the stereochemistry of the uric acid degradation pathway and the catalytic properties of UGL have remained very poorly described. We now report the first direct investigation of the absolute stereochemistry of UGL catalysis. Using chiral chromatographic analyses with substrate enantiomers, we demonstrate that UGL catalysis is stereospecific for substrates with the (S)-hydroxyglycine configuration. The first potent competitive inhibitors for UGL are reported here. These inhibitors are compounds which contain a 2,4-dioxocarboxylate moiety, designed to mimic transient species produced during lyase catalysis. The most potent inhibitor, 2,4-dioxo-4-phenylbutanoic acid, exhibits a KI value of 2.2 nM and is therefore among the most potent competitive inhibitors ever reported for a lyase enzyme. New synthetic alternate substrates for UGL, which are acyl-alpha-hydroxyglycine compounds, are described. Based on these alternate substrates, we introduce the first assay method for monitoring UGL activity directly. Finally, we report the first putative primary nucleotide and derived peptide sequence for UGL. This sequence exhibits a high level of similarity to the fumarylacetoacetate hydrolase family of proteins. Close mechanistic similarities can be visualized between the chemistries of ureidoglycolate lyase and fumarylacetoacetate hydrolase catalysis.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amidine-Lyases / antagonists & inhibitors*
  • Amidine-Lyases / chemistry*
  • Amino Acid Sequence
  • Binding, Competitive
  • Burkholderia cepacia / enzymology
  • Catalysis
  • Chromatography
  • Chromatography, High Pressure Liquid
  • Electrophoresis, Polyacrylamide Gel
  • Enzyme Inhibitors / chemistry*
  • Glycine / chemistry
  • Hydrolases / chemistry
  • Kinetics
  • Lyases / chemistry
  • Models, Chemical
  • Molecular Sequence Data
  • Phenylbutyrates / chemistry
  • Protein Conformation
  • Protein Structure, Tertiary
  • Sequence Homology, Amino Acid
  • Stereoisomerism
  • Substrate Specificity
  • Time Factors
  • Ultraviolet Rays
  • Urea / chemistry
  • Uric Acid / chemistry


  • 2,4-diphenylbutanoic acid
  • Enzyme Inhibitors
  • Phenylbutyrates
  • Uric Acid
  • Urea
  • Hydrolases
  • fumarylacetoacetase
  • Lyases
  • Amidine-Lyases
  • ureidoglycollate lyase
  • Glycine