Sphingobium amiense sp. nov., a novel nonylphenol-degrading bacterium isolated from a river sediment

Int J Syst Evol Microbiol. 2003 Nov;53(Pt 6):2045-8. doi: 10.1099/ijs.0.02581-0.

Abstract

A nonylphenol-degrading bacterial strain (YT(T)) was isolated previously from a river sediment sample obtained in Ami-machi, Ibaraki, Japan, and identified as a Sphingomonas species. In this study, the taxonomic relationship between strain YT(T), a recently described nonylphenol-degrading strain, Sphingomonas cloacae, and Sphingobium yanoikuyae, which is phylogenetically related, was examined. Their phenotypic characteristics were compared and levels of DNA-DNA relatedness between these strains were determined. Based on the results of physiological and biochemical tests and DNA-DNA hybridization, it is proposed that strain YT(T) (=IAM 15006(T)=JCM 11777(T)=CIP 107839(T)) represents a novel species of the genus Sphingobium, Sphingobium amiense sp. nov.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alphaproteobacteria / classification*
  • Alphaproteobacteria / genetics
  • Alphaproteobacteria / isolation & purification
  • Alphaproteobacteria / physiology
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Fresh Water / microbiology
  • Geologic Sediments / microbiology
  • Japan
  • Molecular Sequence Data
  • Phylogeny*
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Bacterial
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/AB047364