AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D421-2. doi: 10.1093/nar/gkh057.

Abstract

Pristionchus pacificus is a free-living nematode of the Diplogastridae family and was recently developed as a satellite system in evolutionary developmental biology. AppaDB, a P.pacificus database, was created (http://appadb.eb.tuebingen. mpg.de) to integrate the genomic data of P.pacificus, comprising the physical map, genetic linkage map, EST and BAC end sequence and hybridization data. This developing database serves as a repository to search and find any information regarding physical contigs or genetic markers required for mapping of mutants. Additionally, it provides a platform for the Caenorhabditis elegans community to compare nematode genetic data in an evolutionary perspective.

MeSH terms

  • Animals
  • Chromosome Mapping
  • Computational Biology
  • Databases, Genetic*
  • Evolution, Molecular
  • Expressed Sequence Tags
  • Genomics*
  • Information Storage and Retrieval
  • Internet
  • Nematoda / genetics*
  • Physical Chromosome Mapping
  • Sequence Tagged Sites
  • Software*
  • User-Computer Interface