Characterization of emerging European-like porcine reproductive and respiratory syndrome virus isolates in the United States

J Virol. 2004 Apr;78(7):3684-703. doi: 10.1128/jvi.78.7.3684-3703.2004.

Abstract

European-like field isolates of porcine reproductive and respiratory syndrome virus (PRRSV) have recently emerged in North America. The full-length genomic sequence of an index isolate characterized in 1999, strain EuroPRRSV, served as the reference strain for further studies of the evolution and epidemiology of European-like isolates (type 1) in the United States. Strain EuroPRRSV shared 90.1 to 100% amino acid identity with the prototype European strain, Lelystad, within the structural and nonstructural open reading frames (ORFs) and 95.3% overall nucleotide identity. The 5' untranslated region and two nonstructural regions within ORF 1 were closely examined due to significant divergence from strain Lelystad. A 51-bp deletion in a region within ORF 1a, coding for nonstructural protein 2 (NSP2), was observed. Sequence analysis of the structural ORFs 2 to 7 of additional European-like isolates indicated that these isolates share 93% nucleotide identity with one another and 95 to 96% identity with the Lelystad strain but only 70% identity with the North American reference strain VR-2332. Phylogenetic analysis with published PRRSV ORF 3, 5, and 7 nucleotide sequences indicated that these newly emerging isolates form a clade with the Lelystad and United Kingdom PRRSV isolates. Detailed analysis of four of these isolates with a panel of 60 monoclonal antibodies directed against the structural proteins confirmed a recognition pattern that was more consistent with strain Lelystad than with other North American isolates.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antigens, Viral / chemistry
  • Antigens, Viral / genetics
  • Base Sequence
  • Europe
  • Genes, Viral / genetics
  • Genetic Variation / genetics
  • Genome, Viral*
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Porcine Reproductive and Respiratory Syndrome / epidemiology*
  • Porcine Reproductive and Respiratory Syndrome / virology*
  • Porcine respiratory and reproductive syndrome virus / chemistry
  • Porcine respiratory and reproductive syndrome virus / genetics*
  • Porcine respiratory and reproductive syndrome virus / isolation & purification*
  • Sequence Analysis, DNA
  • Swine / virology*
  • United States / epidemiology
  • Viral Proteins / chemistry
  • Viral Proteins / genetics

Substances

  • Antigens, Viral
  • Viral Proteins