A microsatellite linkage map for Atlantic salmon (Salmo salar)

Anim Genet. 2004 Apr;35(2):98-105. doi: 10.1111/j.1365-2052.2004.01091.x.


A linkage map of the Atlantic salmon is described here consisting of 15 linkage groups containing 50 microsatellite loci with a 14 additional unlinked markers (including three allozymes). The map shows the largest sex-specific recombination rate differences so far found in any vertebrate species (3.92:1 female:male). Homologies with previous linkage mapping studies of Atlantic salmon and rainbow trout are described. An in silico search of the Genbank database carried out using the microsatellites used in the mapping process identified significant matches between the flanking regions of the microsatellite SS11 and the calcium-binding mitochondrial carrier protein, 'Aralar1'.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Chromosome Mapping*
  • DNA Primers
  • Databases, Nucleic Acid
  • Female
  • Male
  • Membrane Transport Proteins / genetics
  • Microsatellite Repeats / genetics
  • Mitochondrial Proteins / genetics
  • Recombination, Genetic / genetics*
  • Salmo salar / genetics*
  • Sex Factors


  • DNA Primers
  • Membrane Transport Proteins
  • Mitochondrial Proteins