A novel gene, spp91-1, suppresses the splicing defect and the pre-mRNA nuclear export in the prp9-1 mutant

EMBO J. 1992 Sep;11(9):3279-88. doi: 10.1002/j.1460-2075.1992.tb05406.x.

Abstract

Processing and export of nuclear pre-mRNA are believed to be competing processes in the nucleus. In order to identify factors which are involved in these processes, we isolated suppressors that relieve the growth defect of a prp9-1 temperature-sensitive mutant strain of Saccharomyces cerevisiae. The prp9-1 mutation was previously shown to abolish splicing and to target pre-mRNA to the cytoplasm. One of the suppressors, spp91-1, corrects the prp9-1 growth defect through partial restoration of splicing and by a complete reversion of the pre-mRNA escape phenotype. This suppressor is specific for two prp9 alleles and cannot substitute for PRP9 function. The mutant and wild-type alleles of SPP91 were cloned and sequenced. SPP91 encodes a novel protein essential for mitotic growth whose sequence contains motifs indicative of a nuclear localization. In vivo depletion of SPP91 in a prp9-1 genetic background is lethal and is associated with reduced amounts of spliced mRNA and accumulation of pre-mRNA. This observation strongly supports the hypothesis that SPP91 encodes a PRP factor. We suggest that spp91-1 increases pre-mRNA retention in the nucleus by improving the formation of the spliceosome and thereby allowing a larger proportion of the pre-mRNA molecules to be spliced.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Amino Acid Sequence
  • Base Sequence
  • Biological Transport
  • Cell Nucleus / metabolism
  • Cloning, Molecular
  • DNA Mutational Analysis
  • DNA, Fungal
  • Genes, Fungal* / genetics
  • Models, Genetic
  • Molecular Sequence Data
  • Phenotype
  • RNA Precursors / genetics
  • RNA Precursors / metabolism*
  • RNA Splicing*
  • RNA, Fungal / genetics
  • RNA, Fungal / metabolism
  • Restriction Mapping
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / metabolism
  • Suppression, Genetic*

Substances

  • DNA, Fungal
  • RNA Precursors
  • RNA, Fungal

Associated data

  • GENBANK/X66121
  • GENBANK/X66358
  • GENBANK/X66359
  • GENBANK/X66360
  • GENBANK/X66361
  • GENBANK/X66362
  • GENBANK/X66363
  • GENBANK/X66364
  • GENBANK/X66365
  • GENBANK/X67564