SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome

Bioinformatics. 2004 Sep 22;20(14):2312-4. doi: 10.1093/bioinformatics/bth223. Epub 2004 Apr 1.

Abstract

Summary: SPrCY is a web-accessible database which provides comparison of structure prediction results for the Saccharomyces cerevisiae genome. This web service offers the ability to search, analyze and compare the yeast structural predictions from sequence-only (Superfamily, PDBAA BLAST and Pfam) and sequence-structure-based (SAM-T02, 3D-PSSM, mGenTHREADER) methods.

Availability: The service is freely available via web at http://agave.wustl.edu/yeast/

MeSH terms

  • Algorithms
  • Chromosome Mapping / methods*
  • Databases, Genetic*
  • Information Storage and Retrieval / methods
  • Internet
  • Models, Molecular*
  • Protein Conformation
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae Proteins / genetics*
  • Sequence Alignment / methods
  • Sequence Analysis, Protein / methods
  • Structure-Activity Relationship
  • User-Computer Interface*

Substances

  • Saccharomyces cerevisiae Proteins