Sfixem--graphical sequence feature display in Java

Alistair M Chalk; Martin Wennerberg; Erik L L Sonnhammer

doi:10.1093/bioinformatics/bth265

Sfixem--graphical sequence feature display in Java

Bioinformatics. 2004 Oct 12;20(15):2488-90. doi: 10.1093/bioinformatics/bth265. Epub 2004 Apr 15.

Authors

Alistair M Chalk¹, Martin Wennerberg, Erik L L Sonnhammer

Affiliation

¹ Center for Genomics and Bioinformatics, Karolinska Institutet, 17177 Stockholm, Sweden. Alistair.Chalk@cgb.ki.se

PMID: 15087316
DOI: 10.1093/bioinformatics/bth265

Abstract

Sfixem is an sequence feature series (SFS) visualization tool implemented in Java. It is designed to visualize data from sequence analysis programs, allowing the user to view multiple sets of computationally generated analysis to assist the analysis process. SFS is used as the data exchange format.

Availability: Sfixem is available for direct usage or download for local usage at http://sfixem.cgb.ki.se. A protein sequence analysis workbench using Sfixem is available at http://sfinx.cgb.ki.se.

Publication types

Evaluation Study
Research Support, Non-U.S. Gov't

MeSH terms

Algorithms*
Computer Graphics*
Information Storage and Retrieval / methods*
Programming Languages
Sequence Alignment / methods*
Sequence Analysis, Protein / methods*
Sequence Homology, Amino Acid
Software*
User-Computer Interface*