Sequence analysis and genomic organization of a new insect picorna-like virus, Ectropis obliqua picorna-like virus, isolated from Ectropis obliqua

J Gen Virol. 2004 May;85(Pt 5):1145-1151. doi: 10.1099/vir.0.19638-0.

Abstract

The complete nucleotide sequence of a new insect picorna-like virus, Ectropis obliqua picorna-like virus (EoPV), which causes a fatal infection of Ectropis obliqua larvae, has been determined. The genomic RNA of EoPV is 9394 nt in length and contains a single, large open reading frame (nt 391-9351) encoding a polyprotein of 2987 aa. Sequence comparisons with other viral polyproteins revealed that the consensus sequences for picornavirus RNA helicase, protease and RNA-dependent RNA polymerase proteins are found on the genome in order in the 5'-->3' direction. All structural genes were located at the 5' terminus. In terms of sequence similarity, identity and genome organization, EoPV resembles mammalian picornaviruses and three other insect picorna-like viruses: Infectious flacherie virus of silkworm, Sacbrood virus of honeybee and Perina nuda picorna-like virus (PnPV). Phylogenetic analysis showed that EoPV is most closely related to PnPV and suggests that these four insect picorna-like viruses might constitute a new group of insect-infectious RNA viruses.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Capsid Proteins / genetics
  • Endopeptidases / genetics
  • Genome, Viral*
  • Insecta / physiology
  • Insecta / virology*
  • Larva / virology
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Picornaviridae / chemistry
  • Picornaviridae / genetics*
  • RNA Helicases / genetics
  • RNA, Viral / chemistry
  • RNA, Viral / genetics*
  • RNA-Dependent RNA Polymerase / genetics
  • Sequence Alignment
  • Sequence Analysis
  • Tea / parasitology
  • Viral Nonstructural Proteins / genetics

Substances

  • Capsid Proteins
  • RNA, Viral
  • Tea
  • Viral Nonstructural Proteins
  • RNA-Dependent RNA Polymerase
  • Endopeptidases
  • RNA Helicases