Peptide-based inhibitors of the hepatitis C virus NS3 protease: structure-activity relationship at the C-terminal position

J Med Chem. 2004 May 6;47(10):2511-22. doi: 10.1021/jm030573x.

Abstract

The structure-activity relationship at the C-terminal position of peptide-based inhibitors of the hepatitis C virus NS3 protease is presented. The observation that the N-terminal cleavage product (DDIVPC-OH) of a substrate derived from the NS5A/5B cleavage site was a competitive inhibitor of the NS3 protease was previously described. The chemically unstable cysteine residue found at the P1 position of these peptide-based inhibitors could be replaced with a norvaline residue, at the expense of a substantial drop in the enzymatic activity. The fact that an aminocyclopropane carboxylic acid (ACCA) residue at the P1 position of a tetrapeptide such as 1 led to a significant gain in the inhibitory enzymatic activity, as compared to the corresponding norvaline derivative 2, prompted a systematic study of substituent effects on the three-membered ring. We report herein that the incorporation of a vinyl group with the proper configuration onto this small cycle produced inhibitors of the protease with much improved in vitro potency. The vinyl-ACCA is the first reported carboxylic acid containing a P1 residue that produced NS3 protease inhibitors that are significantly more active than inhibitors containing a cysteine at the same position.

MeSH terms

  • Amino Acids, Cyclic / chemical synthesis
  • Amino Acids, Cyclic / chemistry
  • Cyclopropanes / chemical synthesis
  • Cyclopropanes / chemistry
  • Enzyme Inhibitors / chemical synthesis
  • Enzyme Inhibitors / chemistry*
  • Hepacivirus / chemistry*
  • Models, Molecular
  • Molecular Conformation
  • Oligopeptides / chemical synthesis
  • Oligopeptides / chemistry*
  • Stereoisomerism
  • Structure-Activity Relationship
  • Viral Nonstructural Proteins / antagonists & inhibitors*
  • Viral Nonstructural Proteins / chemistry

Substances

  • Amino Acids, Cyclic
  • Cyclopropanes
  • Enzyme Inhibitors
  • NS3 protein, hepatitis C virus
  • Oligopeptides
  • Viral Nonstructural Proteins
  • 1-aminocyclopropane-1-carboxylic acid