Crystal structure of the biologically active form of class Ib ribonucleotide reductase small subunit from Mycobacterium tuberculosis

FEBS Lett. 2004 Jul 2;569(1-3):117-22. doi: 10.1016/j.febslet.2004.05.059.

Abstract

Two nrdF genes of Mycobacterium tuberculosis code for different R2 subunits of the class Ib ribonucleotide reductase (RNR). The proteins are denoted R2F-1 and R2F-2 having 71% sequence identity. The R2F-2 subunit forms the biologically active RNR complex with the catalytic R1E-subunit. We present the structure of the reduced R2F-2 subunit to 2.2 A resolution. Comparison of the R2F-2 structure with a model of R2F-1 suggests that the important differences are located at the C-terminus. We found that within class Ib, the E-helix close to the iron diiron centre has two preferred conformations, which cannot be explained by the redox-state of the diiron centre. In the R2F-2 structure, we also could see a mobility of alphaE in between the two conformations.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Crystallography, X-Ray / methods
  • Models, Molecular
  • Mycobacterium tuberculosis / enzymology*
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Subunits / chemistry
  • Ribonucleotide Reductases / chemistry*
  • Ribonucleotide Reductases / metabolism

Substances

  • Bacterial Proteins
  • Protein Subunits
  • NrdF protein, bacteria
  • Ribonucleotide Reductases

Associated data

  • PDB/1UZR
  • PDB/R1UZRSF