N2-substituted O6-cyclohexylmethylguanine derivatives: potent inhibitors of cyclin-dependent kinases 1 and 2
- PMID: 15239650
- DOI: 10.1021/jm0311442
N2-substituted O6-cyclohexylmethylguanine derivatives: potent inhibitors of cyclin-dependent kinases 1 and 2
Abstract
The adenosine 5'-triphosphate (ATP) competitive cyclin-dependent kinase inhibitor O(6)-cyclohexylmethylguanine (NU2058, 1) has been employed as the lead in a structure-based drug discovery program resulting in the discovery of the potent CDK1 and -2 inhibitor NU6102 (3, IC(50) = 9.5 nM and 5.4 nM vs CDK1/cyclinB and CDK2/cyclinA3, respectively). The SAR for this series have been explored further by the synthesis and evaluation of 45 N(2)-substituted analogues of NU2058. These studies have confirmed the requirement for the hydrogen bonding N(2)-NH group and the requirement for an aromatic N(2)-substituent to confer potency in the series. Additional potency is conferred by the presence of a group capable of donating a hydrogen bond at the 4'-position, for example, the 4'-hydroxy derivative (25, IC(50) = 94 nM and 69 nM vs CDK1/cyclinB and CDK2/cyclinA3, respectively), 4'-monomethylsulfonamide derivative (28, IC(50) = 9 nM and 7.0 nM vs CDK1/cyclinB and CDK2/cyclinA3, respectively), and 4'-carboxamide derivative (34, IC(50) = 67 nM and 64 nM vs CDK1/cyclinB and CDK2/cyclinA3, respectively). X-ray crystal structures have been obtained for key compounds and have been used to explain the observed trends in activity.
Similar articles
-
Structure-based design of a potent purine-based cyclin-dependent kinase inhibitor.Nat Struct Biol. 2002 Oct;9(10):745-9. doi: 10.1038/nsb842. Nat Struct Biol. 2002. PMID: 12244298
-
Identification of novel purine and pyrimidine cyclin-dependent kinase inhibitors with distinct molecular interactions and tumor cell growth inhibition profiles.J Med Chem. 2000 Jul 27;43(15):2797-804. doi: 10.1021/jm990628o. J Med Chem. 2000. PMID: 10956187
-
Probing the ATP ribose-binding domain of cyclin-dependent kinases 1 and 2 with O(6)-substituted guanine derivatives.J Med Chem. 2002 Aug 1;45(16):3381-93. doi: 10.1021/jm020056z. J Med Chem. 2002. PMID: 12139449
-
An analysis of the binding modes of ATP-competitive CDK2 inhibitors as revealed by X-ray structures of protein-inhibitor complexes.Curr Med Chem Anticancer Agents. 2005 Sep;5(5):561-73. doi: 10.2174/1568011054866928. Curr Med Chem Anticancer Agents. 2005. PMID: 16178778 Review.
-
Strategies for the design of potent and selective kinase inhibitors.Curr Pharm Des. 2005;11(14):1845-63. doi: 10.2174/1381612053764850. Curr Pharm Des. 2005. PMID: 15892678 Review.
Cited by
-
ACES: Optimized Alchemically Enhanced Sampling.J Chem Theory Comput. 2023 Jan 11:10.1021/acs.jctc.2c00697. doi: 10.1021/acs.jctc.2c00697. Online ahead of print. J Chem Theory Comput. 2023. PMID: 36630672
-
MM/PB(GB)SA benchmarks on soluble proteins and membrane proteins.Front Pharmacol. 2022 Dec 1;13:1018351. doi: 10.3389/fphar.2022.1018351. eCollection 2022. Front Pharmacol. 2022. PMID: 36532746 Free PMC article.
-
AMBER Drug Discovery Boost Tools: Automated Workflow for Production Free-Energy Simulation Setup and Analysis (ProFESSA).J Chem Inf Model. 2022 Dec 12;62(23):6069-6083. doi: 10.1021/acs.jcim.2c00879. Epub 2022 Nov 30. J Chem Inf Model. 2022. PMID: 36450130 Free PMC article.
-
Discovery of 5,7-Dihydro-6H-pyrrolo[2,3-d]pyrimidin-6-ones as Highly Selective CDK2 Inhibitors.ACS Med Chem Lett. 2022 Oct 6;13(11):1797-1804. doi: 10.1021/acsmedchemlett.2c00408. eCollection 2022 Nov 10. ACS Med Chem Lett. 2022. PMID: 36385925 Free PMC article.
-
Best practices for constructing, preparing, and evaluating protein-ligand binding affinity benchmarks [Article v0.1].Living J Comput Mol Sci. 2022;4(1):1497. doi: 10.33011/livecoms.4.1.1497. Epub 2022 Aug 30. Living J Comput Mol Sci. 2022. PMID: 36382113 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Chemical Information
Molecular Biology Databases
Miscellaneous
