Crystal structure and mutagenesis of a protein phosphatase-1:calcineurin hybrid elucidate the role of the beta12-beta13 loop in inhibitor binding

J Biol Chem. 2004 Oct 8;279(41):43198-206. doi: 10.1074/jbc.M407184200. Epub 2004 Jul 26.

Abstract

Protein phosphatase-1 and protein phosphatase-2B (calcineurin) are eukaryotic serine/threonine phosphatases that share 40% sequence identity in their catalytic subunits. Despite the similarities in sequence, these phosphatases are widely divergent when it comes to inhibition by natural product toxins, such as microcystin-LR and okadaic acid. The most prominent region of non-conserved sequence between these phosphatases corresponds to the beta12-beta13 loop of protein phosphatase-1, and the L7 loop of toxin-resistant calcineurin. In the present study, mutagenesis of residues 273-277 of the beta12-beta13 loop of the protein phosphatase-1 catalytic subunit (PP-1c) to the corresponding residues in calcineurin (312-316), resulted in a chimeric mutant that showed a decrease in sensitivity to microcystin-LR, okadaic acid, and the endogenous PP-1c inhibitor protein inhibitor-2. A crystal structure of the chimeric mutant in complex with okadaic acid was determined to 2.0-A resolution. The beta12-beta13 loop region of the mutant superimposes closely with that of wild-type PP-1c bound to okadaic acid. Systematic mutation of each residue in the beta12-beta13 loop of PP-1c showed that a single amino acid change (C273L) was the most influential in mediating sensitivity of PP-1c to toxins. Taken together, these data indicate that it is an individual amino acid residue substitution and not a change in the overall beta12-beta13 loop conformation of protein phosphatase-1 that contributes to disrupting important interactions with inhibitors such as microcystin-LR and okadaic acid.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Calcineurin / chemistry*
  • Crystallography, X-Ray
  • Dose-Response Relationship, Drug
  • Escherichia coli / metabolism
  • Humans
  • Kinetics
  • Marine Toxins
  • Microcystins
  • Models, Chemical
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis
  • Mutagenesis, Site-Directed
  • Mutation
  • Okadaic Acid / pharmacology
  • Peptides, Cyclic / pharmacology
  • Phosphoprotein Phosphatases / chemistry*
  • Phosphoprotein Phosphatases / genetics*
  • Phosphoric Monoester Hydrolases / chemistry
  • Point Mutation
  • Protein Binding
  • Protein Conformation
  • Protein Phosphatase 1
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins / chemistry
  • Substrate Specificity

Substances

  • Marine Toxins
  • Microcystins
  • Peptides, Cyclic
  • Recombinant Proteins
  • Okadaic Acid
  • Calcineurin
  • Phosphoprotein Phosphatases
  • Protein Phosphatase 1
  • Phosphoric Monoester Hydrolases
  • cyanoginosin LR

Associated data

  • PDB/1U32