Brownian dynamics simulation of nucleosome formation and disruption under stretching

J Theor Biol. 2004 Oct 7;230(3):375-83. doi: 10.1016/j.jtbi.2004.03.028.

Abstract

Using a Brownian dynamics simulation, we numerically studied the interaction of DNA with histone and proposed an octamer-rotation model to describe the process of nucleosome formation. Nucleosome disruption under stretching was also simulated. The theoretical curves of extension versus time as well as of force versus extension are consistent with previous experimental results.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Biomechanical Phenomena
  • Computer Simulation*
  • DNA / metabolism
  • Histones / metabolism
  • Models, Genetic*
  • Nucleosomes / physiology*
  • Nucleosomes / ultrastructure

Substances

  • Histones
  • Nucleosomes
  • DNA