Structure and function of a regulated archaeal triosephosphate isomerase adapted to high temperature

J Mol Biol. 2004 Sep 17;342(3):861-75. doi: 10.1016/j.jmb.2004.07.067.

Abstract

Triosephophate isomerase (TIM) is a dimeric enzyme in eucarya, bacteria and mesophilic archaea. In hyperthermophilic archaea, however, TIM exists as a tetramer composed of monomers that are about 10% shorter than other eucaryal and bacterial TIM monomers. We report here the crystal structure of TIM from Thermoproteus tenax, a hyperthermophilic archaeon that has an optimum growth temperature of 86 degrees C. The structure was determined from both a hexagonal and an orthorhombic crystal form to resolutions of 2.5A and 2.3A, and refined to R-factors of 19.7% and 21.5%, respectively. In both crystal forms, T.tenax TIM exists as a tetramer of the familiar (betaalpha)(8)-barrel. In solution, however, and unlike other hyperthermophilic TIMs, the T.tenax enzyme exhibits an equilibrium between inactive dimers and active tetramers, which is shifted to the tetramer state through a specific interaction with glycerol-1-phosphate dehydrogenase of T.tenax. This observation is interpreted in physiological terms as a need to reduce the build-up of thermolabile metabolic intermediates that would be susceptible to destruction by heat. A detailed structural comparison with TIMs from organisms with growth optima ranging from 15 degrees C to 100 degrees C emphasizes the importance in hyperthermophilic proteins of the specific location of ionic interactions for thermal stability rather than their numbers, and shows a clear correlation between the reduction of heat-labile, surface-exposed Asn and Gln residues with thermoadaptation. The comparison confirms the increase in charged surface-exposed residues at the expense of polar residues.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptation, Physiological
  • Amino Acid Sequence
  • Archaeal Proteins / chemistry*
  • Archaeal Proteins / genetics
  • Archaeal Proteins / metabolism*
  • Base Sequence
  • Crystallography, X-Ray
  • DNA, Archaeal / genetics
  • Dimerization
  • Kinetics
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Structure, Quaternary
  • Pyrococcus / enzymology
  • Pyrococcus / genetics
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Static Electricity
  • Temperature
  • Thermoproteus / enzymology
  • Thermoproteus / genetics
  • Triose-Phosphate Isomerase / antagonists & inhibitors
  • Triose-Phosphate Isomerase / chemistry*
  • Triose-Phosphate Isomerase / genetics
  • Triose-Phosphate Isomerase / metabolism*

Substances

  • Archaeal Proteins
  • DNA, Archaeal
  • Recombinant Proteins
  • Triose-Phosphate Isomerase

Associated data

  • PDB/1W0L
  • PDB/1W0M