Environmental factors, phytoplankton biomass (Chl a) and primary production of two water areas in Daya Bay (Dapeng'ao Bay and Aotou Bay) were investigated during the transition period from spring to summer. Chl a ranged from 3.20 to 13.62 and 13.43 to 26.49 mg m(-3) in Dapeng'ao Bay and Aotou Bay respectively, if data obtained during red tides are excluded. Primary production varied between 239.7 and 1001.4 mg Cm(-2) d(-1) in Dapeng'ao Bay. The regional distribution of Chl a and primary production were mostly consistent from spring to summer in both bays. Seasonal transition characters have been found in Daya Bay from spring to summer, including high values of DO, nitrate and silicate. Size structures of phytoplankton and its primary production do not change very much from spring to summer, with micro-phytoplankton dominating and contributing about 50% of the whole. In Daya Bay, phytoplankton is limited by nitrogen in spring, and by phosphate in summer. Artificial impacts are evident from high temperature effluent from nuclear power stations, aquaculture and sewage. During the investigation, a red tide occurred in Aotou Bay, with a maximum Chl a of 103.23 mgm(-3) at surface and primary production of 2721.9 mg Cm(-2) d(-1) in the red tide center. Raised water temperature and nutrient supply from land-sources help to stimulate annual red tides.