Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity

Arch Biochem Biophys. 2005 Jan 1;433(1):59-70. doi: 10.1016/j.abb.2004.07.034.

Abstract

The members of the mechanistically diverse enolase superfamily catalyze different overall reactions. Each shares a partial reaction in which an active site base abstracts the alpha-proton of the carboxylate substrate to generate an enolate anion intermediate that is stabilized by coordination to the essential Mg(2+) ion; the intermediates are then directed to different products in the different active sites. In this minireview, our current understanding of structure/function relationships in the divergent members of the superfamily is reviewed, and the use of this knowledge for our future studies is proposed.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Binding Sites / genetics
  • Carboxylic Acids / chemistry
  • Catalysis
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Evolution, Molecular*
  • Forecasting
  • Genome, Bacterial
  • Ligands
  • Magnesium / chemistry
  • Models, Chemical
  • Models, Molecular
  • Molecular Structure
  • Mutagenesis, Site-Directed
  • Phosphopyruvate Hydratase / chemistry*
  • Phosphopyruvate Hydratase / genetics*
  • Phosphopyruvate Hydratase / metabolism
  • Protein Structure, Secondary
  • Protons
  • Sensitivity and Specificity
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Carboxylic Acids
  • Ligands
  • Protons
  • Phosphopyruvate Hydratase
  • Magnesium