Carboxymethylproline synthase from Pectobacterium carotorova: a multifaceted member of the crotonase superfamily

Biochemistry. 2004 Dec 21;43(50):15936-45. doi: 10.1021/bi0483662.

Abstract

The simplest carbapenem antibiotic, (5R)-carbapen-2-em-3-carboxylic acid, is biosynthesized from primary metabolites in Pectobacterium carotorova by the action of three enzymes, carboxymethylproline synthase (hereafter named CarB), carbapenam synthetase, and carbapenem synthase. CarB, a member of the crotonase superfamily, catalyzes the formation of (2S,5S)-5-carboxymethylproline from malonyl-CoA and l-pyrroline-5-carboxylate. In this study we show that, in addition, CarB catalyzes the independent decarboxylation of malonyl-CoA and methylmalonyl-CoA and the hydrolysis of CoA esters such as acetyl-CoA and propionyl-CoA. The steady-state rate constants for these reactions are reported. We have identified the intermediates in the CarB reactions with l-pyrroline-5-carboxylate and malonyl-CoA or methylmalonyl-CoA as the CoA esters of (2S,5S)-5-carboxymethylproline and (2S,5S)-6-methyl-5-carboxymethylproline, respectively. The data provided indicate that these intermediates partition between completing turnover and dissociating from the enzyme. On the basis of the steady-state rate constants measured for the CarB-catalyzed hydrolysis of synthetic (2S,5S)-5-carboxymethylprolyl-CoA and for the CarB reaction with malonyl-CoA and l-pyrroline-5-carboxylate, we have calculated the rate constants for each step of these reactions. The results identify CarB as a particularly interesting member of the crotonase superfamily that combines in one net reaction three activities of this superfamily, decarboxylation, C-C bond formation, and CoA ester hydrolysis.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acyl Coenzyme A / metabolism
  • Carbon-Carbon Lyases / classification
  • Carbon-Carbon Lyases / metabolism*
  • Catalysis
  • Decarboxylation
  • Enoyl-CoA Hydratase / classification
  • Enoyl-CoA Hydratase / metabolism*
  • Hydrolysis
  • Kinetics
  • Pyrroles / metabolism
  • Substrate Specificity

Substances

  • Acyl Coenzyme A
  • Pyrroles
  • delta-1-pyrroline-5-carboxylate
  • Carbon-Carbon Lyases
  • carboxymethylproline synthase
  • Enoyl-CoA Hydratase