Recognizing a single base in an individual DNA strand: a step toward DNA sequencing in nanopores

Angew Chem Int Ed Engl. 2005 Feb 18;44(9):1401-4. doi: 10.1002/anie.200462114.

Abstract

Functional supramolecular chemistry at the single-molecule level. Single strands of DNA can be captured inside α-hemolysin transmembrane pore protein to form single-species α-HL·DNA pseudorotaxanes. This process can be used to identify a single adenine nucleotide at a specific location on a strand of DNA by the characteristic reductions in the α-HL ion conductance. This study suggests that α-HL-mediated single-molecule DNA sequencing might be fundamentally feasible.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Toxins / genetics
  • Base Sequence
  • DNA / chemistry*
  • DNA, Single-Stranded / chemistry
  • Deoxyribonucleotides / analysis*
  • Electrochemistry
  • Hemolysin Proteins
  • Ion Transport
  • Poly A / chemistry
  • Poly C / chemistry
  • Porins / genetics
  • Rotaxanes / chemistry
  • Sequence Analysis, DNA / methods*

Substances

  • Bacterial Toxins
  • DNA, Single-Stranded
  • Deoxyribonucleotides
  • Hemolysin Proteins
  • Porins
  • Rotaxanes
  • staphylococcal alpha-toxin
  • Poly A
  • poly(dA)
  • poly(dC)
  • Poly C
  • DNA