Nucleotide-dependent substrate recognition by the AAA+ HslUV protease

Nat Struct Mol Biol. 2005 Mar;12(3):245-51. doi: 10.1038/nsmb898. Epub 2005 Feb 6.

Abstract

ATP-dependent protein degradation is controlled principally by substrate recognition. The AAA+ HslU ATPase is thought to bind protein substrates, denature them, and translocate the unfolded polypeptide into the HslV peptidase. The lack of well-behaved high-affinity substrates for HslUV (ClpYQ) has hampered understanding of the rules and mechanism of substrate engagement. We show that HslUV efficiently degrades Arc repressor, especially at heat-shock temperatures. Degradation depends on sequences near the N terminus of Arc. Fusion protein and peptide-binding experiments demonstrate that this sequence is a degradation tag that binds directly to HslU. Strong binding of this tag to the enzyme requires ATP and Mg(2+). Furthermore, fusion of this sequence to a protein with marked mechanical stability leads to complete degradation. Thus, these experiments demonstrate that HslUV is a powerful protein unfoldase and that initial substrate engagement by the HslU ATPase must occur after ATP binding.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Triphosphatases / metabolism
  • Adenosine Triphosphatases / physiology
  • Adenosine Triphosphate / metabolism*
  • Binding Sites
  • Endopeptidase Clp / metabolism*
  • Escherichia coli Proteins / metabolism*
  • Heat-Shock Proteins / metabolism
  • Heat-Shock Proteins / physiology
  • Magnesium / metabolism*
  • Protein Denaturation / physiology
  • Protein Folding
  • Protein Interaction Mapping
  • Recombinant Fusion Proteins / metabolism
  • Repressor Proteins / metabolism
  • Substrate Specificity / physiology
  • Viral Proteins / metabolism
  • Viral Regulatory and Accessory Proteins

Substances

  • ClpYQ protease, E coli
  • Escherichia coli Proteins
  • Heat-Shock Proteins
  • Recombinant Fusion Proteins
  • Repressor Proteins
  • Viral Proteins
  • Viral Regulatory and Accessory Proteins
  • phage repressor proteins
  • Adenosine Triphosphate
  • Endopeptidase Clp
  • Adenosine Triphosphatases
  • Magnesium