An integrated approach utilizing proteomics and bioinformatics to detect ovarian cancer

J Zhejiang Univ Sci B. 2005 Apr;6(4):227-31. doi: 10.1631/jzus.2005.B0227.

Abstract

Objective: To find new potential biomarkers and establish the patterns for the detection of ovarian cancer.

Methods: Sixty one serum samples including 32 ovarian cancer patients and 29 healthy people were detected by surface-enhanced laser desorption/ionization mass spectrometry (SELDI-MS). The protein fingerprint data were analyzed by bioinformatics tools. Ten folds cross-validation support vector machine (SVM) was used to establish the diagnostic pattern.

Results: Five potential biomarkers were found (2085 Da, 5881 Da, 7564 Da, 9422 Da, 6044 Da), combined with which the diagnostic pattern separated the ovarian cancer from the healthy samples with a sensitivity of 96.7%, a specificity of 96.7% and a positive predictive value of 96.7%.

Conclusions: The combination of SELDI with bioinformatics tools could find new biomarkers and establish patterns with high sensitivity and specificity for the detection of ovarian cancer.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Biomarkers, Tumor / blood*
  • Computational Biology*
  • Female
  • Humans
  • Lasers
  • Mass Spectrometry
  • Middle Aged
  • Ovarian Neoplasms / blood*
  • Ovarian Neoplasms / diagnosis*
  • Peptide Mapping
  • Predictive Value of Tests
  • Proteomics*
  • Reproducibility of Results
  • Sensitivity and Specificity

Substances

  • Biomarkers, Tumor