MADE4: an R package for multivariate analysis of gene expression data

Bioinformatics. 2005 Jun 1;21(11):2789-90. doi: 10.1093/bioinformatics/bti394. Epub 2005 Mar 29.


MADE4, microarray ade4, is a software package that facilitates multivariate analysis of microarray gene-expression data. MADE4 accepts a wide variety of gene-expression data formats. MADE4 takes advantage of the extensive multivariate statistical and graphical functions in the R package ade4, extending these for application to microarray data. In addition, MADE4 provides new graphical and visualization tools that aid in interpretation of multivariate analysis of microarray data.

Publication types

  • Evaluation Study

MeSH terms

  • Algorithms*
  • Computer Graphics
  • Documentation / methods
  • Gene Expression Profiling / methods*
  • Gene Expression Regulation / physiology*
  • Models, Biological
  • Multivariate Analysis
  • Oligonucleotide Array Sequence Analysis / methods*
  • Phylogeny
  • Signal Transduction / physiology
  • Software*
  • User-Computer Interface*