Torsional restraint: a new twist on frameshifting pseudoknots

Nucleic Acids Res. 2005 Mar 30;33(6):1825-33. doi: 10.1093/nar/gki329. Print 2005.

Abstract

mRNA pseudoknots have a stimulatory function in programmed -1 ribosomal frameshifting (-1 PRF). Though we previously presented a model for how mRNA pseudoknots might activate the mechanism for -1 PRF, it did not address the question of the role that they may play in positioning the mRNA relative to the ribosome in this process [E. P. Plant, K. L. M. Jacobs, J. W. Harger, A. Meskauskas, J. L. Jacobs, J. L. Baxter, A. N. Petrov and J. D. Dinman (2003) RNA, 9, 168-174]. A separate 'torsional restraint' model suggests that mRNA pseudoknots act to increase the fraction of ribosomes directed to pause with the upstream heptameric slippery site positioned at the ribosome's A- and P-decoding sites [J. D. Dinman (1995) Yeast, 11, 1115-1127]. Here, experiments using a series of 'pseudo-pseudoknots' having different degrees of rotational freedom were used to test this model. The results of this study support the mechanistic hypothesis that -1 ribosomal frameshifting is enhanced by torsional resistance of the mRNA pseudoknot.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Frameshifting, Ribosomal*
  • Models, Genetic*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Protein Biosynthesis
  • RNA, Messenger / chemistry*
  • RNA, Messenger / metabolism
  • Ribosomes / metabolism
  • Rotation

Substances

  • RNA, Messenger