Light-induced reactions of Escherichia coli DNA photolyase monitored by Fourier transform infrared spectroscopy

FEBS J. 2005 Apr;272(8):1855-66. doi: 10.1111/j.1742-4658.2005.04617.x.

Abstract

Cyclobutane-type pyrimidine dimers generated by ultraviolet irradiation of DNA can be cleaved by DNA photolyase. The enzyme-catalysed reaction is believed to be initiated by the light-induced transfer of an electron from the anionic FADH- chromophore of the enzyme to the pyrimidine dimer. In this contribution, first infrared experiments using a novel E109A mutant of Escherichia coli DNA photolyase, which is catalytically active but unable to bind the second cofactor methenyltetrahydrofolate, are described. A stable blue-coloured form of the enzyme carrying a neutral FADH radical cofactor can be interpreted as an intermediate analogue of the light-driven DNA repair reaction and can be reduced to the enzymatically active FADH- form by red-light irradiation. Difference Fourier transform infrared (FT-IR) spectroscopy was used to monitor vibronic bands of the blue radical form and of the fully reduced FADH- form of the enzyme. Preliminary band assignments are based on experiments with 15N-labelled enzyme and on experiments with D2O as solvent. Difference FT-IR measurements were also used to observe the formation of thymidine dimers by ultraviolet irradiation and their repair by light-driven photolyase catalysis. This study provides the basis for future time-resolved FT-IR studies which are aimed at an elucidation of a detailed molecular picture of the light-driven DNA repair process.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus subtilis / genetics
  • Catalysis / radiation effects
  • DNA Damage / radiation effects
  • DNA Repair / radiation effects
  • Deoxyribodipyrimidine Photo-Lyase / chemistry*
  • Deoxyribodipyrimidine Photo-Lyase / genetics
  • Deoxyribodipyrimidine Photo-Lyase / isolation & purification
  • Deoxyribodipyrimidine Photo-Lyase / metabolism*
  • Enzyme Activation / radiation effects
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Flavin-Adenine Dinucleotide / analogs & derivatives*
  • Flavin-Adenine Dinucleotide / chemistry
  • Flavin-Adenine Dinucleotide / metabolism
  • Folic Acid / analogs & derivatives*
  • Folic Acid / metabolism
  • Light*
  • Mutation / genetics
  • Photochemistry
  • Spectroscopy, Fourier Transform Infrared
  • Thymine / chemistry
  • Thymine / metabolism
  • Thymine / radiation effects
  • Uridine / analogs & derivatives*
  • Uridine / chemistry
  • Uridine / metabolism
  • Uridine / radiation effects

Substances

  • Flavin-Adenine Dinucleotide
  • flavin semiquinone
  • 5-fluorouridine
  • 5,11-methenyltetrahydrohomofolate
  • Folic Acid
  • Deoxyribodipyrimidine Photo-Lyase
  • Thymine
  • Uridine