Mechanism of transcription factor recruitment by acidic activators

J Biol Chem. 2005 Jun 10;280(23):21779-84. doi: 10.1074/jbc.M502627200. Epub 2005 Apr 11.

Abstract

Many transcriptional activators are intrinsically unstructured yet display unique, defined conformations when bound to target proteins. Target-induced folding provides a mechanism by which activators could form specific interactions with an array of structurally unrelated target proteins. Evidence for such a binding mechanism has been reported previously in the context of the interaction between the cancer-related c-Myc protein and the TATA-binding protein, which can be modeled as a two-step process in which a rapidly forming, low affinity complex slowly converts to a more stable form, consistent with a coupled binding and folding reaction. To test the generality of the target-induced folding model, we investigated the binding of two widely studied acidic activators, Gal4 and VP16, to a set of target proteins, including TATA-binding protein and the Swi1 and Snf5 subunits of the Swi/Snf chromatin remodeling complex. Using surface plasmon resonance, we show that these activator-target combinations also display bi-phasic kinetics suggesting two distinct steps. A fast initial binding phase that is inhibited by high ionic strength is followed by a slow phase that is favored by increased temperature. In all cases, overall affinity increases with temperature and, in most cases, with increased ionic strength. These results are consistent with a general mechanism for recruitment of transcriptional components to promoters by naturally occurring acidic activators, by which the initial contact is mediated predominantly through electrostatic interactions, whereas subsequent target-induced folding of the activator results in a stable complex.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromatin / chemistry
  • Chromosomal Proteins, Non-Histone
  • DNA-Binding Proteins / metabolism
  • Dose-Response Relationship, Drug
  • Glutathione Transferase / metabolism
  • Herpes Simplex Virus Protein Vmw65 / metabolism
  • Ions
  • Kinetics
  • Macromolecular Substances / metabolism
  • Plasmids / metabolism
  • Protein Binding
  • Protein Folding
  • Recombinant Fusion Proteins / metabolism
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / metabolism
  • Surface Plasmon Resonance
  • Temperature
  • Thermodynamics
  • Time Factors
  • Trans-Activators / metabolism*
  • Transcription Factors / metabolism*

Substances

  • Chromatin
  • Chromosomal Proteins, Non-Histone
  • DNA-Binding Proteins
  • GAL4 protein, S cerevisiae
  • Herpes Simplex Virus Protein Vmw65
  • Ions
  • Macromolecular Substances
  • Recombinant Fusion Proteins
  • SNF5 protein, S cerevisiae
  • SWI1 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Trans-Activators
  • Transcription Factors
  • Glutathione Transferase