Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling

Plant Cell. 2005 May;17(5):1387-96. doi: 10.1105/tpc.105.030981. Epub 2005 Apr 13.


Although the importance of auxin in root development is well known, the molecular mechanisms involved are still unknown. We characterized a rice (Oryza sativa) mutant defective in crown root formation, crown rootless1 (crl1). The crl1 mutant showed additional auxin-related abnormal phenotypic traits in the roots, such as decreased lateral root number, auxin insensitivity in lateral root formation, and impaired root gravitropism, whereas no abnormal phenotypic traits were observed in aboveground organs. Expression of Crl1, which encodes a member of the plant-specific ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES protein family, was localized in tissues where crown and lateral roots are initiated and overlapped with beta-glucuronidase staining controlled by the DR5 promoter. Exogenous auxin treatment induced Crl1 expression without de novo protein biosynthesis, and this induction required the degradation of AUXIN/INDOLE-3-ACETIC ACID proteins. Crl1 contains two putative auxin response elements (AuxREs) in its promoter region. The proximal AuxRE specifically interacted with a rice AUXIN RESPONSE FACTOR (ARF) and acted as a cis-motif for Crl1 expression. We conclude that Crl1 encodes a positive regulator for crown and lateral root formation and that its expression is directly regulated by an ARF in the auxin signaling pathway.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs / genetics
  • Gene Expression Regulation, Plant / drug effects
  • Gene Expression Regulation, Plant / genetics*
  • Indoleacetic Acids / metabolism*
  • Indoleacetic Acids / pharmacology
  • Molecular Sequence Data
  • Oryza / genetics
  • Oryza / growth & development*
  • Oryza / metabolism*
  • Plant Proteins / genetics
  • Plant Proteins / metabolism*
  • Plant Roots / genetics
  • Plant Roots / growth & development*
  • Plant Roots / metabolism*
  • Promoter Regions, Genetic / genetics
  • Response Elements / drug effects
  • Response Elements / genetics
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*


  • Indoleacetic Acids
  • Plant Proteins
  • Transcription Factors

Associated data

  • GENBANK/AB200234
  • GENBANK/AB200235
  • GENBANK/AB200236
  • GENBANK/AB200237
  • GENBANK/AB200238
  • GENBANK/AF432232
  • GENBANK/AF447887
  • GENBANK/AF447890
  • GENBANK/AF447891
  • GENBANK/AF447892
  • GENBANK/AF447893
  • GENBANK/AF447897
  • GENBANK/BE050765
  • GENBANK/BG873644