In this paper, two monolayers self-assembled on a silver substrate are compared: a monolayer of n-hexadecanethiol and a monolayer of n-11-perfluorobutylundecanethiol. The protecting properties of both monolayers have been extensively studied by X-ray photoelectron spectroscopy, contact angle, polarization modulation infrared reflection absorption spectroscopy, conventional electrochemical techniques (polarization curves and electrochemical impedance spectroscopy), and scanning vibrating electrode technique. Both monolayers were successfully self-assembled but organization is slightly different, the fluorinated segment introduces small disorganization. Nevertheless, good homogeneous corrosion protection is observed for each monolayer.