Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells

Protein Sci. 2005 Aug;14(8):2044-50. doi: 10.1110/ps.051455505. Epub 2005 Jun 29.

Abstract

The previously identified dendritic cell-derived ubiquitin-like protein (DC-UbP) was implicated in cellular differentiation and apoptosis. Sequence alignment suggested that it contains a ubiquitin-like (UbL) domain in the C terminus. Here, we present the solution NMR structure and backbone dynamics of the UbL domain of DC-UbP. The overall structure of the domain is very similar to that of Ub despite low similarity (<30%) in amino-acid sequence. One distinct feature of the domain structure is its highly positively charged surface that is different from the corresponding surfaces of the well-known UbL modifiers, Ub, NEDD8, and SUMO-1. The key amino-acid residues responsible for guiding polyubiquitinated proteins to proteasome degradation in Ub are not conserved in the UbL domain. This implies that the UbL domain of DC-UbP may have its own specific interaction partners with other yet unknown cellular functions related to the Ub pathway.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Models, Molecular*
  • Molecular Sequence Data
  • Nerve Tissue Proteins / chemistry*
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Structure, Tertiary
  • Sequence Alignment
  • Solutions
  • Static Electricity
  • Ubiquitin / chemistry
  • Ubiquitins / chemistry*

Substances

  • Nerve Tissue Proteins
  • Solutions
  • UBTD2 protein, human
  • Ubiquitin
  • Ubiquitins

Associated data

  • PDB/1TTN