Bipolar DNA translocation contributes to highly processive DNA unwinding by RecBCD enzyme

J Biol Chem. 2005 Nov 4;280(44):37069-77. doi: 10.1074/jbc.M505520200. Epub 2005 Jul 22.


We recently demonstrated that the RecBCD enzyme is a bipolar DNA helicase that employs two single-stranded DNA motors of opposite polarity to drive translocation and unwinding of duplex DNA. We hypothesized that this organization may explain the exceptionally high rate and processivity of DNA unwinding catalyzed by the RecBCD enzyme. Using a stopped-flow dye displacement assay for unwinding activity, we test this idea by analyzing mutant RecBCD enzymes in which either of the two helicase motors is inactivated by mutagenesis. Like the wild-type RecBCD enzyme, the two mutant proteins maintain the ability to bind tightly to blunt duplex DNA ends in the absence of ATP. However, the rate of forward translocation for the RecB motor-defective enzyme is only approximately 30% of the wild-type rate, whereas for the RecD motor-defective enzyme, it is approximately 50%. More significantly, the processivity of translocation is substantially reduced by approximately 25- and 6-fold for each mutant enzyme, respectively. Despite retaining the capacity to bind blunt dsDNA, the RecB-mutant enzyme has lost the ability to unwind DNA unless the substrate contains a short 5'-terminated single-stranded DNA overhang. The consequences of this observation for the architecture of the single-stranded DNA motors in the initiation complex are discussed.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • DNA Helicases / metabolism*
  • DNA, Bacterial / metabolism*
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / genetics
  • DNA, Single-Stranded / metabolism*
  • Escherichia coli / enzymology*
  • Exodeoxyribonuclease V / genetics
  • Exodeoxyribonuclease V / metabolism*
  • Kinetics
  • Models, Biological
  • Mutagenesis, Site-Directed
  • Plasmids / chemistry
  • Plasmids / genetics
  • Plasmids / metabolism
  • Protein Subunits / metabolism


  • DNA, Bacterial
  • DNA, Single-Stranded
  • Protein Subunits
  • Exodeoxyribonuclease V
  • DNA Helicases