Structural heterogeneity in DNA: temperature dependence of 2-aminopurine fluorescence in dinucleotides

Chemphyschem. 2005 Aug 12;6(8):1622-7. doi: 10.1002/cphc.200400648.

Abstract

The fluorescent base analogue 2-aminopurine is a sensitive probe for local dynamics of DNA. Its fluorescence is quenched by interaction with the neighboring bases, but the underlying mechanisms are still under investigation. We studied 2-aminopurine fluorescence in dinucleotides with each of the natural bases. Consistently, two of the four fluorescence-decay components depend strongly on temperature. Our results indicate that these components are due to the excited-state dynamics of a single conformational state. We propose a variation of the gating model in which transient unstacking occurs in the excited state.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 2-Aminopurine / chemistry*
  • DNA / chemistry*
  • Fluorescence
  • Nucleotides / chemistry*
  • Sensitivity and Specificity
  • Spectrometry, Fluorescence / methods
  • Temperature*
  • Time Factors

Substances

  • Nucleotides
  • 2-Aminopurine
  • DNA