Quantum chemical studies of protein structure

Philos Trans R Soc Lond B Biol Sci. 2005 Jun 29;360(1458):1347-61. doi: 10.1098/rstb.2003.1421.

Abstract

Quantum chemical methods now permit the prediction of many spectroscopic observables in proteins and related model systems, in addition to electrostatic properties, which are found to be in excellent accord with those determined from experiment. I discuss the developments over the past decade in these areas, including predictions of nuclear magnetic resonance chemical shifts, chemical shielding tensors, scalar couplings and hyperfine (contact) shifts, the isomer shifts and quadrupole splittings in Mössbauer spectroscopy, molecular energies and conformations, as well as a range of electrostatic properties, such as charge densities, the curvatures, Laplacians and Hessians of the charge density, electrostatic potentials, electric field gradients and electrostatic field effects. The availability of structure/spectroscopic correlations from quantum chemistry provides a basis for using numerous spectroscopic observables in determining aspects of protein structure, in determining electrostatic properties which are not readily accessible from experiment, as well as giving additional confidence in the use of these techniques to investigate questions about chemical bonding and chemical reactions.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • Models, Molecular*
  • Nuclear Magnetic Resonance, Biomolecular / methods
  • Protein Conformation*
  • Proteins / chemistry*
  • Quantum Theory*
  • Spectroscopy, Mossbauer / methods
  • Static Electricity

Substances

  • Proteins