Abstract
The activation dynamics of the transcription factor NF-kappaB exhibit damped oscillatory behavior when cells are stimulated by tumor necrosis factor-alpha (TNFalpha) but stable behavior when stimulated by lipopolysaccharide (LPS). LPS binding to Toll-like receptor 4 (TLR4) causes activation of NF-kappaB that requires two downstream pathways, each of which when isolated exhibits damped oscillatory behavior. Computational modeling of the two TLR4-dependent signaling pathways suggests that one pathway requires a time delay to establish early anti-phase activation of NF-kappaB by the two pathways. The MyD88-independent pathway required Inferon regulatory factor 3-dependent expression of TNFalpha to activate NF-kappaB, and the time required for TNFalpha synthesis established the delay.
Publication types
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Research Support, N.I.H., Extramural
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Research Support, Non-U.S. Gov't
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Research Support, U.S. Gov't, P.H.S.
MeSH terms
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Adaptor Proteins, Signal Transducing
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Adaptor Proteins, Vesicular Transport / deficiency
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Adaptor Proteins, Vesicular Transport / physiology
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Animals
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Antigens, Differentiation / physiology
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Cell Line
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Cells, Cultured
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Computer Simulation
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Cycloheximide / pharmacology
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DNA-Binding Proteins / genetics
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DNA-Binding Proteins / physiology
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Gene Expression Profiling
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Gene Expression Regulation
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I-kappa B Kinase
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I-kappa B Proteins / biosynthesis
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I-kappa B Proteins / genetics
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I-kappa B Proteins / metabolism
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Interferon Regulatory Factor-3
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Kinetics
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Lipopolysaccharides / immunology*
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Lipopolysaccharides / metabolism
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Mice
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Models, Biological
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Myeloid Differentiation Factor 88
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NF-KappaB Inhibitor alpha
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NF-kappa B / metabolism*
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Oligonucleotide Array Sequence Analysis
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Protein Serine-Threonine Kinases / metabolism
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Protein Synthesis Inhibitors / pharmacology
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Receptors, Immunologic / deficiency
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Receptors, Immunologic / metabolism
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Receptors, Immunologic / physiology
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Signal Transduction
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Time Factors
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Toll-Like Receptor 4
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Transcription Factors / genetics
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Transcription Factors / physiology
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Tumor Necrosis Factor-alpha / biosynthesis
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Tumor Necrosis Factor-alpha / metabolism
Substances
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Adaptor Proteins, Signal Transducing
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Adaptor Proteins, Vesicular Transport
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Antigens, Differentiation
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DNA-Binding Proteins
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I-kappa B Proteins
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Interferon Regulatory Factor-3
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Irf3 protein, mouse
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Lipopolysaccharides
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Myd88 protein, mouse
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Myeloid Differentiation Factor 88
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NF-kappa B
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Nfkbia protein, mouse
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Protein Synthesis Inhibitors
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Receptors, Immunologic
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TICAM-1 protein, mouse
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Tlr4 protein, mouse
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Toll-Like Receptor 4
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Transcription Factors
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Tumor Necrosis Factor-alpha
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NF-KappaB Inhibitor alpha
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Cycloheximide
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Protein Serine-Threonine Kinases
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Chuk protein, mouse
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I-kappa B Kinase
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Ikbkb protein, mouse
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Ikbke protein, mouse