Multiple modes of active center communication in thiamin diphosphate-dependent enzymes

Acc Chem Res. 2005 Sep;38(9):755-63. doi: 10.1021/ar040244e.

Abstract

Detection of interaction between cofactors at the active centers of homodimeric and homotetrameric enzymes is usually elusive by steady-state kinetic approaches and requires protein variants where such interactions are diminished or exaggerated. In this Account, evidence for active-center interactions will be presented for the following thiamin diphosphate-dependent enzymes: yeast pyruvate decarboxylase, benzoylformate decarboxylase, and examples from the 2-oxoacid dehydrogenase multienzyme complex class. The dissymmetry of active sites is especially evident in the X-ray structures of these enzymes with substrate/substrate analogues bound. Perturbations that reveal active center communication include use of chromophoric substrates and substitutions of active center residues on putative pathways.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Binding Sites
  • Carboxy-Lyases / chemistry
  • Carboxy-Lyases / metabolism*
  • Crystallography, X-Ray
  • Enzyme Activation
  • Ketone Oxidoreductases / chemistry
  • Ketone Oxidoreductases / metabolism*
  • Kinetics
  • Models, Chemical
  • Multienzyme Complexes / chemistry
  • Multienzyme Complexes / metabolism*
  • Pyruvate Decarboxylase / chemistry
  • Pyruvate Decarboxylase / metabolism*
  • Substrate Specificity
  • Thiamine Pyrophosphate / chemistry*
  • Yeasts / enzymology

Substances

  • Multienzyme Complexes
  • Ketone Oxidoreductases
  • Carboxy-Lyases
  • Pyruvate Decarboxylase
  • benzoylformate decarboxylase
  • Thiamine Pyrophosphate