Dioxygenases without requirement for cofactors: identification of amino acid residues involved in substrate binding and catalysis, and testing for rate-limiting steps in the reaction of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase

Curr Microbiol. 2005 Nov;51(5):344-52. doi: 10.1007/s00284-005-0065-3. Epub 2005 Sep 20.

Abstract

1H-3-Hydroxy-4-oxoquinaldine 2,4-dioxygenase (Hod), catalyzing cleavage of its heteroaromatic substrate to form carbon monoxide and N-acetylanthranilate, belongs to the alpha/beta hydrolase fold family of enzymes. Analysis of protein variants suggested that Hod has adapted active-site residues of the alpha/beta hydrolase fold for the dioxygenolytic reaction. H251 was recently shown to act as a general base to abstract a proton from the organic substrate. Residue S101, which corresponds to the nucleophile of the catalytic triad of alpha/beta-hydrolases, presumably participates in binding the heteroaromatic substrate. H102 and residues located in the topological region of the triad's acidic residue appear to influence O2 binding and reactivity. A tyrosine residue might be involved in the turnover of the ternary complex [HodH+-3,4-dioxyquinaldine dianion-O2]. Absence of viscosity effects and kinetic solvent isotope effects suggests that turnover of the ternary complex, rather than substrate binding, product release, or proton movements, involves the rate-determining step in the reaction catalyzed by Hod.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Amino Acids / genetics
  • Amino Acids / physiology*
  • Binding Sites / genetics
  • Catalytic Domain / genetics
  • Coenzymes / pharmacology*
  • Dioxygenases / genetics*
  • Dioxygenases / isolation & purification
  • Dioxygenases / metabolism*
  • Enzyme Stability
  • Hydrogen-Ion Concentration
  • Kinetics
  • Mutagenesis, Site-Directed
  • Sequence Alignment
  • Viscosity

Substances

  • Amino Acids
  • Coenzymes
  • 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase (decyclizing, CO-forming)
  • Dioxygenases