DNA triplex stabilization by a delta-carboline derivative tethered to third strand oligonucleotides

Bioorg Med Chem Lett. 2006 Mar 15;16(6):1647-50. doi: 10.1016/j.bmcl.2005.12.014. Epub 2006 Jan 11.

Abstract

A delta-carboline derivative was covalently coupled to a 7 mer oligonucleotide at its 5'- or 3'-end. The stability of triplexes formed from the conjugates and a double-helical target was studied by UV melting experiments. Compared to the unmodified control triple helices, triplexes with the conjugate exhibit a significantly higher stability. However, the degree of stabilization depends on the particular triplex structure formed.

MeSH terms

  • Base Pairing
  • Carbolines / chemistry*
  • DNA / chemistry*
  • DNA / genetics
  • Nucleic Acid Conformation
  • Nucleic Acid Heteroduplexes / chemistry*
  • Nucleic Acid Heteroduplexes / radiation effects
  • Oligonucleotides / chemistry*
  • Temperature
  • Ultraviolet Rays

Substances

  • Carbolines
  • Nucleic Acid Heteroduplexes
  • Oligonucleotides
  • triplex DNA
  • DNA