The Fe-CO bond energy in myoglobin: a QM/MM study of the effect of tertiary structure

Biophys J. 2006 Feb 15;90(4):L27-9. doi: 10.1529/biophysj.105.078097. Epub 2005 Dec 30.

Abstract

The Fe-CO bond dissociation energy (BDE) in myoglobin (Mb) has been calculated with B3LYP quantum mechanics/molecular mechanics methods for 22 different Mb conformations, generated from molecular dynamics simulations. Our average BDE of 8.1 kcal/mol agrees well with experiment and shows that Mb weakens the Fe-CO bond by 5.8 kcal/mol; the calculations provide detailed atomistic insight into the origin of this effect. BDEs for Mb conformations with the R carbonmonoxy tertiary structure are on average 2.6 kcal/mol larger than those with the T deoxy tertiary structure, suggesting two functionally distinct allosteric states. This allostery is partly explained by the reduction in distal cavity steric crowding as Mb moves from its T to R tertiary structure.

Publication types

  • Letter
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Carbon Monoxide / chemistry*
  • Computer Simulation*
  • Heme / chemistry*
  • Humans
  • Iron / chemistry*
  • Models, Molecular
  • Myoglobin / chemistry*
  • Oxygen / chemistry

Substances

  • Myoglobin
  • Heme
  • Carbon Monoxide
  • Iron
  • Oxygen