R-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35

J Mol Biol. 2006 Feb 24;356(3):790-801. doi: 10.1016/j.jmb.2005.12.018. Epub 2005 Dec 21.

Abstract

Although detailed crystal structures of haemoglobin (Hb) provide a clear understanding of the basic allosteric mechanism of the protein, and how this in turn controls oxygen affinity, recent experiments with artificial effector molecules have shown a far greater control of oxygen binding than with natural heterotropic effectors. Contrary to the established text-book view, these non-physiological compounds are able to reduce oxygen affinity very strongly without switching the protein to the T (tense) state. In an earlier paper we showed that bezafibrate (BZF) binds to a surface pocket on the alpha subunits of R state Hb, strongly reducing the oxygen affinity of this protein conformation. Here we report the crystallisation of Hb with L35, a related compound, and show that this binds to the central cavity of both R and T state Hb. The mechanism by which L35 reduces oxygen affinity is discussed, in relation to spectroscopic studies of effector binding.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Binding Sites
  • Carboxyhemoglobin / chemistry*
  • Carboxyhemoglobin / metabolism
  • Chlorides / physiology
  • Crystallography, X-Ray
  • Hemoglobins / chemistry*
  • Hemoglobins / metabolism
  • Horses
  • Humans
  • Oxygen / antagonists & inhibitors
  • Oxygen / chemistry*
  • Oxygen / metabolism
  • Phenylurea Compounds / chemistry*
  • Phenylurea Compounds / pharmacology
  • Protein Binding
  • Protein Structure, Tertiary

Substances

  • Chlorides
  • Hemoglobins
  • Phenylurea Compounds
  • L 35
  • deoxyhemoglobin
  • Carboxyhemoglobin
  • Oxygen

Associated data

  • PDB/2D5X
  • PDB/2D5Z
  • PDB/2D60