Stenotrophomonas koreensis sp. nov., isolated from compost in South Korea

Int J Syst Evol Microbiol. 2006 Jan;56(Pt 1):81-4. doi: 10.1099/ijs.0.63826-0.

Abstract

A Gram-negative, rod-shaped, non-spore-forming bacterium (TR6-01T) was isolated from compost near Daejeon city in South Korea. On the basis of 16S rRNA gene sequence similarity, strain TR6-01T was shown to belong to the class Gammaproteobacteria, related to Stenotrophomonas acidaminiphila (97.1 %) and Stenotrophomonas maltophilia (96.9 %); the phylogenetic distance from any other established species within the genus Stenotrophomonas was less than 97.0 %. Phenotypic and chemotaxonomic data (major ubiquinone Q-8; fatty acid profile) supported the affiliation of strain TR6-01T to the genus Stenotrophomonas. The results of DNA-DNA hybridization and physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain TR6-01T from the five Stenotrophomonas species with validly published names. TR6-01T therefore represents a novel species, for which the name Stenotrophomonas koreensis sp. nov. is proposed, with the type strain TR6-01T (= KCTC 12211T = JCM 13256T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Fatty Acids
  • Korea
  • Molecular Sequence Data
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Sequence Homology, Nucleic Acid
  • Soil Microbiology*
  • Soil*
  • Species Specificity
  • Stenotrophomonas / chemistry
  • Stenotrophomonas / classification*
  • Stenotrophomonas / isolation & purification
  • Stenotrophomonas / physiology

Substances

  • Fatty Acids
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Soil

Associated data

  • GENBANK/AB166885