Determination of the 3' terminal nucleotide of DNA fragments

Nucleic Acids Res. 1975 Mar;2(3):319-25. doi: 10.1093/nar/2.3.319.

Abstract

A new method for determining the 3'-terminal nucleotide of a DNA strand is presented. Use is made of the fact that one (and only one) 2',3'-dideoxyribonucleotide can be added to the 3'-end of a DNA fragment with calf thymus terminal transferase. Addition of more than one nucleotide analog per strand is impossible due to the absence of a 3'-terminal hydroxyl group. If the terminatind dideoxyribonucleotide contains an (alpha 32p) label, the resulting 3'-blocked strand can be digested by "nearest neighbor" techniques and the original 3'-endgroup determined. Picomole quantities of DNA strands can be labeled and the 3'-end determined.

MeSH terms

  • Animals
  • Base Sequence*
  • Biochemical Phenomena
  • Biochemistry*
  • Cattle
  • DNA Nucleotidyltransferases
  • DNA*
  • Deoxyribonucleases
  • Deoxyribonucleotides / analysis
  • Methods
  • Micrococcus / enzymology
  • Nucleotidyltransferases
  • Oligonucleotides
  • Phosphoric Diester Hydrolases
  • Polynucleotides
  • Spleen / enzymology
  • Thymus Gland / enzymology

Substances

  • Deoxyribonucleotides
  • Oligonucleotides
  • Polynucleotides
  • DNA
  • DNA Nucleotidyltransferases
  • Nucleotidyltransferases
  • Deoxyribonucleases
  • Phosphoric Diester Hydrolases