DRTF: a database of rice transcription factors

Ge Gao; Yingfu Zhong; Anyuan Guo; Qihui Zhu; Wen Tang; Weimou Zheng; Xiaocheng Gu; Liping Wei; Jingchu Luo

doi:10.1093/bioinformatics/btl107

DRTF: a database of rice transcription factors

Bioinformatics. 2006 May 15;22(10):1286-7. doi: 10.1093/bioinformatics/btl107. Epub 2006 Mar 21.

Authors

Ge Gao¹, Yingfu Zhong, Anyuan Guo, Qihui Zhu, Wen Tang, Weimou Zheng, Xiaocheng Gu, Liping Wei, Jingchu Luo

Affiliation

¹ Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China.

PMID: 16551659
DOI: 10.1093/bioinformatics/btl107

Abstract

Summary: DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family. The database can be browsed and searched with a user-friendly web interface.

Availability: DRTF is available at http://drtf.cbi.pku.edu.cn

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Database Management Systems*
Databases, Protein*
Information Storage and Retrieval / methods*
Internet
Oryza / genetics*
Oryza / metabolism*
Transcription Factors / classification
Transcription Factors / genetics*
User-Computer Interface*

Substances

Transcription Factors