Deinococcus ficus sp. nov., isolated from the rhizosphere of Ficus religiosa L

Int J Syst Evol Microbiol. 2006 Apr;56(Pt 4):787-791. doi: 10.1099/ijs.0.64007-0.

Abstract

A pale-pink strain (CC-FR2-10T) from the rhizosphere of the sacred tree Ficus religiosa L. in Taiwan was investigated by using a polyphasic taxonomic approach. The cells were Gram-positive, rod-shaped and non-spore-forming. Phylogenetic analyses using the 16S rRNA gene sequence of the isolate indicated that the organism belongs to the genus Deinococcus, the highest sequence similarities being found with Deinococcus grandis (96.1 %), Deinococcus radiodurans (94.3 %), Deinococcus radiopugnans (93.2 %), Deinococcus indicus (93.0 %), Deinococcus proteolyticus (92.5 %), Deinococcus murrayi (92.4 %) and Deinococcus geothermalis (90.7 %). The DNA-DNA relatedness with respect to D. grandis DSM 3963T was 17.9 %. Chemotaxonomic data revealed that strain CC-FR2-10T contains only menaquinone MK-8 as the respiratory quinone, unknown phosphoglycolipids as the predominant polar lipids and 16 : 1omega7c, 17 : 1omega8c and 17 : 1omega9c iso as the predominant fatty acids. The biochemical and chemotaxonomic properties demonstrate that strain CC-FR2-10T represents a novel species, for which the name Deinococcus ficus sp. nov. is proposed. The type strain is CC-FR2-10T (=CCUG 51391T [corrected] = CIP 108832T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Deinococcus / chemistry
  • Deinococcus / classification*
  • Deinococcus / genetics
  • Deinococcus / isolation & purification*
  • Ficus / microbiology*
  • Molecular Sequence Data
  • Phylogeny
  • Plant Roots / microbiology*
  • RNA, Ribosomal, 16S / analysis
  • RNA, Ribosomal, 16S / genetics
  • Soil Microbiology*

Substances

  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/AY941086