G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss

Bioinformatics. 2006 Sep 15;22(18):2189-91. doi: 10.1093/bioinformatics/btl123. Epub 2006 Apr 21.

Abstract

We report a novel protein domain-G8-which contains five repeated beta-strand pairs and is present in some disease-related proteins such as PKHD1, KIAA1199, TMEM2 as well as other uncharacterized proteins. Most G8-containing proteins are predicted to be membrane-integral or secreted. The G8 domain may be involved in extracellular ligand binding and catalysis. It has been reported that mis-sense mutations in the two G8 domains of human PKHD1 protein resulted in a less stable protein and are associated with autosomal-recessive polycystic kidney disease, indicating the importance of the domain structure. G8 is also present in the N-terminus of some non-syndromic hearing loss disease-related proteins such as KIAA1109 and TMEM2. Discovery of G8 domain will be important for the research of the structure/function of related proteins and beneficial for the development of novel therapeutics.

Contact: liangsp@hunnu.edu.cn

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Conserved Sequence
  • Evolution, Molecular
  • Hearing Loss, Sensorineural / genetics
  • Hearing Loss, Sensorineural / metabolism*
  • Hyaluronoglucosaminidase
  • Membrane Proteins / chemistry*
  • Membrane Proteins / genetics
  • Molecular Sequence Data
  • Polycystic Kidney Diseases / genetics
  • Polycystic Kidney Diseases / metabolism*
  • Protein Structure, Tertiary
  • Proteins / chemistry*
  • Proteins / genetics
  • Receptors, Cell Surface / chemistry*
  • Receptors, Cell Surface / genetics
  • Sequence Alignment / methods
  • Sequence Analysis, Protein / methods*
  • Sequence Homology, Amino Acid
  • Species Specificity

Substances

  • CEMIP2 protein, human
  • Membrane Proteins
  • PKHD1 protein, human
  • Proteins
  • Receptors, Cell Surface
  • CEMIP protein, human
  • Hyaluronoglucosaminidase