Studies of monomeric and homodimeric oxazolo[4,5-b]pyridinium cyanine dyes as fluorescent probes for nucleic acids visualization

J Biochem Biophys Methods. 2006 Oct 31;68(3):155-65. doi: 10.1016/j.jbbm.2006.04.006. Epub 2006 May 25.

Abstract

The series of recently synthesized monomeric and homodimeric cyanine dyes based on monomethine cyanine chromophore with oxazolo[4,5-b]pyridinium and quinoline end groups [Vassilev A, Deligeorgiev T, Gadjev N, Drexhage K-H. Synthesis of novel monomeric and homodimeric cyanine dyes based on oxazolo[4,5-b]pyridinium and quinolinium end groups for nucleic acid detection, Dyes Pigm 2005;66:135-142] were studied as possible fluorescent probes for nucleic acids detection. Significant fluorescence enhancement and intensity level (quantum yield up to 0.75) was observed for all the dyes in the presence of DNA. The oxazolo[4,5-b]pyridinium cyanines demonstrated high sensitivity as fluorescent stains for post-electrophoretic visualization of nucleic acids in agarose gels upon both VIS and UV transillumination, and the visualized band contained 0.8 ng of dsDNA.

MeSH terms

  • Carbocyanines / chemistry*
  • DNA / analysis
  • DNA / chemistry
  • Dimerization
  • Electrophoresis, Agar Gel
  • Fluorescent Dyes / chemistry*
  • Indoles / chemistry*
  • Nucleic Acids / analysis*
  • Nucleic Acids / chemistry
  • Oxazoles / chemistry*
  • Pyridinium Compounds / chemistry*
  • Spectrometry, Fluorescence
  • Staining and Labeling

Substances

  • BEBO cyanine dye
  • Carbocyanines
  • Fluorescent Dyes
  • Indoles
  • Nucleic Acids
  • Oxazoles
  • Pyridinium Compounds
  • DNA