The time evolution of silica nanoparticles in solutions of tetrapropylammonium (TPA) has been studied using a combination of small-angle scattering, conductivity, and pH measurements to provide the first comprehensive analysis of nanoparticle structural and compositional changes at elevated temperatures. We have found that silica-TPA nanoparticles subjected to hydrothermal treatment (70-90 degrees C) grow via an Ostwald ripening mechanism with growth rates that depend on both pH and temperature. Small-angle X-ray (SAXS) and neutron (SANS) scattering confirm that the core-shell structure of the particles, initially present at room temperature, is maintained during heating, but an evolution toward sphericity is evidenced especially at high values of pH. SAXS absolute intensity calculations were utilized to calculate the changes in nanoparticle composition and concentration over time. These changes along with the conductivity and pH measurements and SANS contrast matching studies indicate that, upon heating, TPA becomes embedded in the core of nanoparticles giving rise to more zeolitic-looking nanomaterials.